Pharmacogenomics for AI agents: cited drug–gene, gene and rsID lookups plus a medication screen.
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Given a list of generic drug names, say which ones have a curated drug–gene record, with which genes and what each record rests on (a CPIC or DPWG guideline, a drug label, or the primary literature), and which are not covered. Needs no genotype. Use it before discussing whether genetics could matter for someone's medicines.
Generic names, e.g. ["clopidogrel", "simvastatin"].
Given a list of generic drug names, say which ones have a curated drug–gene record, with which genes and what each record rests on (a CPIC or DPWG guideline, a drug label, or the primary literature), and which are not covered. Needs no genotype. Use it before discussing whether genetics could matter for someone's medicines.
| Argument | Type | Description |
|---|---|---|
| medications* | array | Generic names, e.g. ["clopidogrel", "simvastatin"]. |
{
"type": "object",
"required": [
"medications"
],
"properties": {
"medications": {
"type": "array",
"items": {
"type": "string"
},
"maxItems": 30,
"minItems": 1,
"description": "Generic names, e.g. [\"clopidogrel\", \"simvastatin\"]."
}
},
"additionalProperties": false
}List the genes in the DeepDNA knowledge base, with a one-line summary and category for each.
No arguments.
{
"type": "object",
"properties": {},
"additionalProperties": false
}Pharmacogenomic guidance for a gene, optionally for one drug: guideline (CPIC or DPWG, "drug label", or null when the record rests on the primary literature), summary of the recommendation, phenotypes and sources. Omit drug to list every drug curated for that gene.
| Argument | Type | Description |
|---|---|---|
| drug | string | Generic drug name, e.g. clopidogrel. Optional. |
| gene* | string | Pharmacogene symbol, e.g. CYP2C19. |
{
"type": "object",
"required": [
"gene"
],
"properties": {
"drug": {
"type": "string",
"description": "Generic drug name, e.g. clopidogrel. Optional."
},
"gene": {
"type": "string",
"description": "Pharmacogene symbol, e.g. CYP2C19."
}
},
"additionalProperties": false
}Everything curated about one gene: function, key variants with rsIDs, metabolizer or function phenotypes, drug interactions, what a consumer genotyping array can and cannot tell you, and sources.
| Argument | Type | Description |
|---|---|---|
| symbol* | string | HGNC gene symbol, e.g. CYP2C19. Case-insensitive. |
{
"type": "object",
"required": [
"symbol"
],
"properties": {
"symbol": {
"type": "string",
"description": "HGNC gene symbol, e.g. CYP2C19. Case-insensitive."
}
},
"additionalProperties": false
}One variant by dbSNP rsID: gene, star-allele or common name, alleles, functional effect, population frequency and sources. Send the rsID only, never the user's genotype. To compare a raw DNA file, do it in the agent with the record's reading block (GRCh37 plus-strand reference and variant allele): skip it when countable is false, don't trust A/T or C/G positions (strand_ambiguous) unless the file's strand is known, and treat a chip call of a rare pathogenic variant as unconfirmed. A count at one position is not a phenotype or metabolizer status.
| Argument | Type | Description |
|---|---|---|
| rsid* | string | dbSNP identifier, e.g. rs4244285. |
{
"type": "object",
"required": [
"rsid"
],
"properties": {
"rsid": {
"type": "string",
"description": "dbSNP identifier, e.g. rs4244285."
}
},
"additionalProperties": false
}Register the user's interest in DeepDNA's private beta (DNA file parsing, annotation, bloodwork; not deployed yet). Only call this after the user has explicitly agreed to share their email with DeepDNA for this purpose, and set user_consent to true. Stores the email and the optional use case; see https://deepdna.ai/privacy/.
| Argument | Type | Description |
|---|---|---|
| email* | string | The user's email address. |
| use_case | string | Optional. What the user is building, in a sentence or two. Max 500 characters. |
| user_consent* | boolean | Must be true: the user agreed to share their email with DeepDNA for the private beta. |
{
"type": "object",
"required": [
"email",
"user_consent"
],
"properties": {
"email": {
"type": "string",
"description": "The user's email address."
},
"use_case": {
"type": "string",
"description": "Optional. What the user is building, in a sentence or two. Max 500 characters."
},
"user_consent": {
"type": "boolean",
"description": "Must be true: the user agreed to share their email with DeepDNA for the private beta."
}
},
"additionalProperties": false
}