Psilocin Human Neuron Transcriptomics

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com.psilocybin-research/transcriptomicsv2.0.0 Domain verified

Read-only psilocin human-neuron gene results, pathway sensitivities and archived provenance.

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{
  "_meta": {
    "io.modelcontextprotocol.registry/official": {
      "status": "active",
      "isLatest": true,
      "updatedAt": "2026-11-06T17:32:17.116088Z",
      "publishedAt": "2026-11-06T17:32:17.116088Z",
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        "src": "https://psilocybin-research.com/assets/pwa/icon-192.png",
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        "mimeType": "image/png"
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    ],
    "title": "Psilocin Human Neuron Transcriptomics",
    "$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
    "remotes": [
      {
        "url": "https://psilocybin-research.com/mcp/transcriptomics",
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    "version": "2.0.0",
    "websiteUrl": "https://psilocybin-research.github.io/psilocin-human-neuron-transcriptomics/",
    "description": "Read-only psilocin human-neuron gene results, pathway sensitivities and archived provenance."
  }
}

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Call this server's tools from your browser. Nothing to install.

https://psilocybin-research.com/mcp/transcriptomics

Requests go through mcptry because browsers can't call most MCP servers directly. Header values are sent to the server for that request only and are never stored or logged.

Tool list from our last check. Connect live to refresh it.

get_transcriptomic_gene Read-only

Exact symbol or Ensembl ID. Returns DESeq2 estimates for all three contrasts unless one is specified, missing values, source tables, citations and limitations. No automatic alias substitution; not a functional measurement.

genestring, required

contraststring

Install

Try it

Call this server's tools from your browser. Nothing to install.

https://psilocybin-research.com/mcp/transcriptomics

Requests go through mcptry because browsers can't call most MCP servers directly. Header values are sent to the server for that request only and are never stored or logged.

Tool list from our last check. Connect live to refresh it.

get_transcriptomic_gene Read-only

genestring, required

contraststring

Tools (5)

get_transcriptomic_gene

read-only

Argument	Type	Description
gene*	string
contrast	string

Input schema (JSON)

{
  "type": "object",
  "required": [
    "gene"
  ],
  "properties": {
    "gene": {
      "type": "string",
      "maxLength": 100,
      "minLength": 1
    },
    "contrast": {
      "enum": [
        "day1_vs_control",
        "day3_vs_control",
        "day3_vs_day1"
      ],
      "type": "string"
    }
  },
  "additionalProperties": false
}

get_transcriptomic_pathways

Search frozen pathway identifiers by literal substring (spaces become underscores). Returns all FGSEA variants and BOTH CAMERA settings where tested, including nonsignificant results. Paginate at most five pathways per call. Not independent replication.

read-only

Argument	Type	Description
limit	integer
query	string
offset	integer
contrast	string

Input schema (JSON)

{
  "type": "object",
  "properties": {
    "limit": {
      "type": "integer",
      "maximum": 5,
      "minimum": 1
    },
    "query": {
      "type": "string",
      "maxLength": 160
    },
    "offset": {
      "type": "integer",
      "maximum": 100,
      "minimum": 0
    },
    "contrast": {
      "enum": [
        "day1_vs_control",
        "day3_vs_control",
        "day3_vs_day1"
      ],
      "type": "string"
    }
  },
  "additionalProperties": false
}

get_transcriptomic_provenance

Fixed Zenodo DOI, archive checksums, analysis commit, source-table checksums, field definitions, pooled sample design and attribution/licence notices. Separate from the live publication database; updates require a reviewed snapshot deployment.

read-only

No arguments.

Input schema (JSON)

{
  "type": "object",
  "properties": {},
  "additionalProperties": false
}

get_transcriptomic_robustness

Complete imported CAMERA tables for both settings, all ten Bayesian model summaries and diagnostics, alias sensitivity, exploratory DNA-maintenance or targeted redox results. topic defaults to all. Includes negative results and scientific limitations; no model fitting.

read-only

Argument	Type	Description
topic	string

Input schema (JSON)

{
  "type": "object",
  "properties": {
    "topic": {
      "enum": [
        "all",
        "oxphos",
        "dna",
        "redox"
      ],
      "type": "string"
    }
  },
  "additionalProperties": false
}

search_transcriptomic_genes

Literal symbol or Ensembl-ID discovery in fixed Zenodo v1.2.0 primary RNA-seq results. Returns bounded matches; not publication search or semantic search.

read-only

Argument	Type	Description
limit	integer
query*	string
offset	integer

Input schema (JSON)

{
  "type": "object",
  "required": [
    "query"
  ],
  "properties": {
    "limit": {
      "type": "integer",
      "maximum": 50,
      "minimum": 1
    },
    "query": {
      "type": "string",
      "maxLength": 100,
      "minLength": 1
    },
    "offset": {
      "type": "integer",
      "maximum": 50000,
      "minimum": 0
    }
  },
  "additionalProperties": false
}

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get_transcriptomic_gene Read-only

Install

Try it

get_transcriptomic_gene Read-only

Install

Tools (5)

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